Name | Links | Category | Restricted License | GPU Acceleration |
Abyss | Homepage
Install with bioconda
| High-Throughput Sequencing | | |
Adam | Homepage
Install with bioconda
| High-Throughput Sequencing | | |
Bowtie2 | Homepage
Install with bioconda
| High-Throughput Sequencing | | |
Burrow-Wheeler Aligner | Homepage
Install with bioconda
| High-Throughput Sequencing | | |
Delly | Homepage
Install with bioconda
| High-Throughput Sequencing | | |
Fastp | Homepage
Install with bioconda
| High-Throughput Sequencing | | |
GATK3 | Homepage
Install with bioconda
| High-Throughput Sequencing | | |
GATK4 | Homepage
Install with bioconda
| High-Throughput Sequencing | | |
Pear | Homepage
Install with bioconda
| High-Throughput Sequencing | | |
Sambamba | Homepage
Install with bioconda
| High-Throughput Sequencing | | |
Selscan | Homepage
Install with bioconda
| High-Throughput Sequencing | | |
Beagle-lib | Homepage
Install with bioconda
| Linkage/ Phylogenetics | | |
RAxML | Homepage
Install with bioconda
| Linkage/ Phylogenetics | | |
Maxquant | Homepage
Install with bioconda
| Mass Spectrometry | Maxquant Freeware Software License | |
Autodock-vina | Homepage
Install with bioconda
| Molecular Docking | | |
Blast | Homepage
Install with bioconda
| Sequence Analysis | | |
Diamond | Homepage
Install with bioconda
| Sequence Analysis | | |
Magicblast | Homepage
Install with bioconda
| Sequence Analysis | | |
Meme | Homepage
Install with bioconda
| Sequence Analysis | | |
rDock | Homepage
Install with bioconda
| Structural Biology | | |
Canu | Homepage
Install with bioconda
| Third generation sequencing | | |
Circlator | Homepage
Install with bioconda
| Third generation sequencing | | |
DALIGNER | Homepage
Install with bioconda
| Third generation sequencing | | |
DBG2OLC | Homepage
Install with bioconda
| Third generation sequencing | | |
Flye | Homepage
Install with bioconda
| Third generation sequencing | | |
MHAP | Homepage
Install with bioconda
| Third generation sequencing | | |
Miniasm | Homepage
Install with bioconda
| Third generation sequencing | | |
Raven | Homepage
Install with bioconda
| Third generation sequencing | | |
SMARTdenovo | Homepage
Install with bioconda
| Third generation sequencing | | |
SPAdes | Homepage
Install with bioconda
| Third generation sequencing | | |
Wtdbg2 | Homepage
Install with bioconda
| Third generation sequencing | | |
Cromwell | Homepage
Install with bioconda
| Workflow manager | | |
Nextflow | Homepage
Install with bioconda
| Workflow manager | | |
Snakemake | Homepage
Install with bioconda
| Workflow manager | | |