MutSpot

Name of software MutSpot 
Purpose Somatic non-coding mutation hotspot detection
Name of Contact Amanda Guo & Anders Skanderup
Email of technical contact Guoy1@gis.a-star.edu.sg
skanderupamj@gis.a-star.edu.sg
Summary of software function

Recurrence and clustering of somatic mutations (hotspots) in cancer genomes may  indicate positive selection and involvement in tumorigenesis. MutSpot performs genome-wide inference of mutation hotspots in non-coding and regulatory DNA of cancer genomes. MutSpot performs feature selection across hundreds of epigenetic and sequence features followed by estimation of position- and patient-specific background somatic mutation probabilities. MutSpot is user-friendly, works on a standard workstation, and scales to thousands of cancer genomes.

MutSpot is freely available for academic use. Commercial usage requires a license.

Publications describing software & its application Guo, Y.A., Chang, M.M. & Skanderup, A.J. MutSpot: detection of non-coding mutation hotspots in cancer genomes. npj Genom. Med. 5, 26 (2020). https://doi.org/10.1038/s41525-020-0133-4